PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK02366.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NAC
Protein Properties Length: 201aa    MW: 23183.7 Da    PI: 9.8828
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK02366.4genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.31e-55151601129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kge 98 
                lppGfrFhPtdee++++yL++kv ++++ + ++i+++d++k+ePwdLpk++k +ekewyfF++rd+ky+tg r+nrat+sgyWkatgkdke+++k     
  PK02366.4  15 LPPGFRFHPTDEEIITYYLTEKVLNTNFIA-SAIADADLNKCEPWDLPKRAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIYNKgnI-- 111
                79*************************877.78***************99999*****************************************9650.. PP

        NAM  99 l..................vglkktLvfykgrapkgektdWvmheyrle 129
                +                  vg+kktLvfykgrapkgek++Wvmheyrle
  PK02366.4 112 KnsllssssssssssstnlVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 160
                3455566666667777777****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-6212185IPR003441NAC domain
PROSITE profilePS5100557.87415184IPR003441NAC domain
PfamPF023653.9E-3016159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
XSSSSDHNHN HLIDLPPGFR FHPTDEEIIT YYLTEKVLNT NFIASAIADA DLNKCEPWDL  60
PKRAKMGEKE WYFFCQRDRK YPTGMRTNRA TESGYWKATG KDKEIYNKGN IKNSLLSSSS  120
SSSSSSSTNL VGMKKTLVFY KGRAPKGEKS NWVMHEYRLE GKFSYYNLPK SAKDEWVVCR  180
VFHKNIGNNN NNIQKKIMNP X
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-521318515166NO APICAL MERISTEM PROTEIN
1ut4_B8e-521318515166NO APICAL MERISTEM PROTEIN
1ut7_A8e-521318515166NO APICAL MERISTEM PROTEIN
1ut7_B8e-521318515166NO APICAL MERISTEM PROTEIN
3swm_A9e-521318518169NAC domain-containing protein 19
3swm_B9e-521318518169NAC domain-containing protein 19
3swm_C9e-521318518169NAC domain-containing protein 19
3swm_D9e-521318518169NAC domain-containing protein 19
3swp_A9e-521318518169NAC domain-containing protein 19
3swp_B9e-521318518169NAC domain-containing protein 19
3swp_C9e-521318518169NAC domain-containing protein 19
3swp_D9e-521318518169NAC domain-containing protein 19
4dul_A8e-521318515166NAC domain-containing protein 19
4dul_B8e-521318515166NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010088484.11e-108NAC domain-containing protein 100
SwissprotQ9FLJ23e-89NC100_ARATH; NAC domain-containing protein 100
TrEMBLW9QN111e-108W9QN11_9R
STRINGVIT_08s0007g07640.t013e-99(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.12e-97Arabidopsis NAC domain containing protein 87